The wire bonding could be totally done by hand - manual machines come up on ebay almost every week(generally $3.5k-$12k, depending). WAS largely done by hand, with different levels of automation(or none). Here would be the manual procedure(roughly):
Basically imagine a stereo microscope with specimen area(work bed) that can be moved in two planes(3 on a better machine). So, module is dropped onto a fixture that gets it within .030-40"(say 1 mm). At that point the operator cranks the handles around to get the table so the first point lines up with their "crosshairs" in the microscope. At that point both crank handles are zeroed for easier math. At that point it is merely a matter of moving from point to point following a chart of the proper stopping point along the X & Y axis. The wire-bond wire comes on a spool, and is essentially spot welded to the trace. The operator on a totally manual machine could slowly bring the head down the last .10-15"(.3.5mm),spark, lift the head and crank to the attachment point for the other end, spark and snip the wire in one motion.
These machines, even the manual ones, are infinately better than what they had back in the day.
http://www.westbond.com/machines.htm#manual_die
Ebay has lots of nice stereo microscopes. The Amscope brand isn't fancy, but at less than $300, they are the ticket. The microscope cameras are where you will probably find more frustration in finding one that suit you.
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